Henning Stahlberg

Current Project

The Structural Basis of Neurodegenration

The Structure and Function of Membrane Proteins, studied by Cryo-EM

Research

The laboratory of Henning Stahlberg, University of Basel, is employing high-resolution electron microscopy to study neurodegeneration, and membrane protein systems. To this end, the group is developing imaging technology in the areas of sample preparation and data analysis software systems such as focus-em.org, dynamo-em.org, and openbeb.org. Stahlberg has studied various membrane protein systems by cryo-electron microscopy over the last decade, and has characterized water and ion channels, transporters, and secretion system membrane proteins, as well as protein aggregation (alpha-synuclein). The work of Stahlberg has been recognized by the NSF Career Award (USA).

Biography

Education
July 2002Habilitation (Biophysics), University of Basel, Switzerland, with Prof. Andreas Engel (Uni Basel): “Transmission Electron Microscopy of Proteins and Protein Complexes”
July 1997 Ph.D. (Structural Biology), Federal Institute of Technology (EPFL), Lausanne, Switzerland, with Prof. Jacques Dubochet (Uni Lausanne) and Prof. Horst Vogel (EPFL): “Transmission Electron Microscopy of Transmembrane Proteins”
August 1992 Diploma (Physics), Technical University, Berlin, Germany, with Prof. Ferenc Mezei (TU Berlin): “Magnetic Properties of Thin Metallic Films”
Employment
04/09 – pres. Director of C-CINA
Full Professor (Ordinarius), Biozentrum, University of Basel, Switzerland
04/09 – 03/10 Adjunct Assoc. Professor, Mol. Cell. Biol., UC Davis, CA, USA
07/07 – 03/09 Associate Professor (tenured), Mol. Cell. Biology, UC Davis, CA, USA
08/03 - 06/07 Assistant Professor, Mol. Cell. Biology, UC Davis, CA, USA
08/02 - 07/03 Group Leader Structural Biology, Biozentrum, Uni Basel, Switzerland
01/98 - 07/02 PostDoc, Structural Biology, Biozentrum, University of Basel, Switzerland
1990 - 1991 Undergrad Researcher, Neutron Scattering, HMI, Berlin, Germany
1989 - 1990 Software Developer, IWIS Scientific Visualization Softw., Berlin, Germany
Organization of Unique Conferences
June 2014Gordon Research Conference on 3D EM, Organizer and Chair, Spain.
June 2013Gordon Research Conference on 3D EM, Co-Chair, New London, NH, USA.
Jun. 2005Gordon Research Conference on Mechanisms of Membrane Transport, Session chair for Aquaporin session, Tilton School, Tilton, NH, USA.
Organization of Repeating Conference Series
Aug. 2018, 2016, 2014, 2012, 2010, 2008: Biennial 10-day workshops: EMBO Cryo-EM workshop, co-Organizer, EMBL, Heidelberg, Germany.
Mar. 2018, 2016, 2014: Biennial 1-week workshops: Int. Symposium on Cryo‐EM 3D Image Analysis, Co-Organizer, Tahoe, CA, USA
Sept. 2017, 2016, 2015, 2014, 2013, 2012: Annual 1-week Workshops: International Workshop on Sub-Volume Averaging of Electron Tomography data, Organizer and Chair, University Basel, Switzerland. See dynamo-em.org/workshop
Aug. 2016, 2012, 2010, 2008, 2006: Biennial 1-week workshops: International Workshop on 2dx Image Processing, Organizer and Chair, University Basel, Switzerland (2010,2012), UC Davis, CA, USA (2008,2006). See 2dx.org/workshop
Nov. 2005, Mar. 2005, Nov. 2004, Jun. 2004, Mar. 2004: Quarterly 1-day workshops: Bay area cryo-EM meeting, Stanford, UC Davis, San Francisco, Santa Cruz, Berkeley, CA, USA. Organizer or co-organizer

Publications

-+

Identification of a Dps contamination in Mitomycin-C-induced expression of Colicin Ia

Pipercevic, J., Jakob, R.P., Righetto, R., Goldie, K., Stahlberg, H., Maier, T., Hiller, S.

Biochim. Biophys. Acta Biomembr. 1863(7), 183607 (2021)

PubMed

DOI: BBAB

202

Structural basis of drug recognition by the multidrug transporter ABCG2

Kowal, J., Ni, D., Jackson, S.M., Manolaridis, I., Stahlberg, H., Locher, K.P.

J. Mol. Biol. in press, (2021)

PubMed

DOI: bioRxiv

201

Structures of ABCG2 under turnover conditions reveal a key step in drug transport mechanism

Yu, Q., Ni, D., Kowal, J., Manolaridis, I., Jackson, S.M., Stahlberg, H., Locher, K.P.

bioRxiv 2021.03.03.433600, (2021)

DOI: bioRxiv

200

Insight into Lipopolysaccharide Translocation by Cryo-EM structures of a LptDE Transporter in Complex with Pro-Macrobodies

Botte, M., Ni, D., Schenck, S., Zimmermann, I., Chami, M., Bocquet, N., Egloff, P., Bucher, D., Trabuco, M., Cheng, R.K.Y., Brunner, J.D., Seeger, M.A., Stahlberg, H., Hennig, M.

bioRxiv.org 2021.03.23.436624, (2021)

DOI: bioRxiv

199

Functional and structural characterization of Serratia marcescens ExbB: determinants of the interaction with HasB/TonB

Biou, V., Adaixo, R., Chami, M., Coureux. P., Laurent B., Ntsogo, Y., Cardoso de Amorim, G., Izadi-Pruneyre, N., Malosse, C., Chamot-Rooke, J., Stahlberg, H., Delepelaire, P.

bioRxiv.org 2021.04.21.440815, (2021)

DOI: bioRxiv

198

Cryo-EM structural studies of the agonist complexed human TRPV4 ion-channel reveals novel structural rearrangements resulting in an open-conformation

Botte, M., Ulrich, A.K.C., Adaixo, R., Gnutt, D., Brockmann, A., Bucher, D., Chami, M., Bocquet, N., Ebbinghaus-Kintscher, U., Puetter, V., Becker, A., Egner, U., Stahlberg, H., Hennig, M., Holton, S.J.

bioRxiv , 2020.10.13.334797 (2020)

DOI: DOI

197

Structural investigation of ACE2 dependent disassembly of the trimeric SARS-CoV-2 Spike glycoprotein

Ni, D., Lau, K., Lehmann, F., Fränkl, A., Hacker, D., Pojer, F., Stahlberg, H.

bioRxiv 2020.10.12.336016, (2020)

196

Alterations in sub-axonal architecture between normal aging and Parkinson's diseased human brains using label-free cryogenic X-ray nanotomography

Tran, H.T., Tsai, E.H.R., Lewis, A., Moors, T., Bol, J.G.J.M., Rostami, I., Diaz, A., Joker, A.J., Guizar-Sicairos, M., Raabe, J., Stahlberg, H., van de Berg, W.D.J., Holler, M., Shahmoradian, S.

Frontiers in Neuroscience 14(570019), (2020)

PubMed

DOI: DOI

195

Structural basis of the activation of the CC chemokine receptor 5 by a chemokine agonist

Tsai, C.-J., Dietz, N.B., Pamula, F., Grahl, A., Goldie, K., Guixa-Gonzalez, R., Schertler, G.F.X., Hartley, O., Stahlberg, H., Maier, T., Deupi, X., Grzesiek, S.

bioRxiv 2020.11.27.401117, (2020)

194

Coordination-Driven Monolayer-to-Bilayer Transition in Two-Dimensional Metal-Organic Networks

Moradi, M., Opara, N., Housecroft, C., Tulli, L., Stahlberg, H., Jung, T., Shahgaldian, P.

J. Phys. Chem. (in press), (2021)

PubMed

DOI: J. Phys. Chem.

193

Architecture of the centriole cartwheel-containing region revealed by cryo-electron tomography

Klena, N., Le Guennec, M., Tassin, A.M., Van den Hoek, H., Erdmann, P.S., Schaffer, M., Geimer, S., Aeschlimann. G., Kovacik, L., Goldie, K., Sadian, Y., Stahlberg, H., Engel, B.D., Hamel, V., Guichard, P.

EMBO J. e106246, 1-7 (2020)

PubMed

DOI: DOI

192

Single particle analysis for high resolution 2D electron crystallography

Righetto, R., Stahlberg, H.

Methods in Mol. Biology. 2215, 267-284 (2021)

PubMed

DOI: DOI

191

Single particle cryo-EM of the complex between interphotoreceptor retinoid-binding protein and a monoclonal antibody

Sears, A.E., Albiez, S., Gulati, S., Wang, B., Kiser, P., Kovacik, L., Engel, A., Stahlberg, H., Palczewski, K.

FASEB J. 34(10), 13918-13934 (2020)

PubMed

DOI: DOI

190

Structural basis of Focal Adhesion Kinase activation on lipid membranes

Acebrón, I., Righetto, R., Schoenherr, C., de Buhr, S., Redondo, P., Culley, J., Rodríguez, C.F., Daday, C., Biyani, N., Llorca, O., Byron, A., Chami, M., Gräter. F., Boskovic J., Frame, M.C., Stahlberg, H., Lietha, D.

EMBO J. 39(e104743), (2020)

DOI: DOI

189

Protease-activation using anti-idiotypic masks enables tumor specificity of a folate receptor 1-T cell bispecific antibody

M. Geiger, K.-G. Stubenrauch, J. Sam, W.F. Richter, G. Jordan, J. Eckmann, C. Hage, V. Nicolini, A. Freimoser-Grundschober, M. Ritter, M.E. Lauer, Stahlberg, H., Ringler, P., J. Patel, E. Sullivan, S. Grau-Richards, S. Endres, S. Kobold, P. Umaña, P. Brünker, C. Klein

Nature Commun. 11(1), 3196 (2020)

DOI: DOI

188

The Contorsbody, an antibody format for agonism: design, structure, and function

Georges, G.J., Dengl, S., Bujotzek, A., Hesse, F., Fischer, J.A.a., Gärtner, A., Benz, J., Lauer, M.E., Ringler, P., Stahlberg, H., Plath, F., Brinkmann, U., Imhof-Jung, S.

Comp. Struct. Biol. J. 18, 1210-1220 (2020)

DOI: DOI

187

High-resolution cryo-EM structure of urease from the pathogen Yersinia enterocolitica

Righetto, R., Anton, L., Rima, L., Jakob, R.P., Zivanov, J., Mahi, M.-A., Ringler, P., Schwede, T., Maier, T., Stahlberg, H.

Nature Commun. 11, 5101 (2020)

DOI: Nature Comm.

186

Cryo-EM, X-ray diffraction, and atomistic simulations reveal determinants for the formation of a supramolecular myelin-like proteolipid lattice

Ruskamo, S., Krokengen, O.C., Kowal, J., Nieminen, T., Lehtimäki, M., Raasakka, A., Dandey, V., Vattulainen, I., Stahlberg, H., Kursula, P.

J. Biol. Chemistry 295(26), 8692-8705 (2020)

PubMed

DOI: DOI

185

New insights on the structure of alpha-synuclein fibrils using cryo-electron microscopy

Guerrero-Ferreira, R., Kovacik, L., Ni, D., Stahlberg, H.

Current Opinion in Neurobiology 61, 89-95 (2020)

PubMed

DOI: DOI

184

Grayscale e-beam lithography: Effects of a delayed development for well-controlled 3D patterning

Mortelmans, T., Kazasiz, D., Guzenko, V.A., Padeste, C., Braun, T., Stahlberg, H., Li, X., Ekinci, Y.

Microelectronic Engineering 225, 111272 (2020)

DOI: DOI

183

DuoMab: a novel CrossMab-based IgG-derived antibody format for enhanced antibody-dependent cell-mediated cytotoxicity

Sustmann, C., Dickopf, S., Regula, J.T., Kettenberger, H., Mølhøj, M., Gassner, C., Weininger, D., Fenn, S., Manigold, T., Kling, L., Künkele, K.P., Schwaiger, M., Bossenmaier, B., Griese, J.J., Hopfner, K.P., Graff, A., Stahlberg, H., Ringler, P., Lauer, M.E., Brinkmann, U., Schaefer, W., Klein, C.

MAbs 11(8), 1402-1414 (2019)

PubMed

DOI: DOI

182

Diverse roles of TssA-like proteins in the assembly of bacterial type VI secretion systems

Schneider, J.P., Nazarov, S.50, Liuzzo, M., Ringel, P.D., Stahlberg, H., Basler, M.

EMBO J. 38: e100825, 1-17 (2019)

PubMed

DOI: DOI

181

A helical inner scaffold provides a structural basis for centriole cohesion

Le Guennec, M., Klena, N., Gambarotto, D., Laporte, M.H., Tassin, A.M., van den Hoek, H., Erdmann, P.S., Schaffer, M., Kovacik, L., Borgers, S., Goldie, K., Stahlberg, H., Bornens, M., Azimzadeh, J., Engel, B.D., Hamel, V., Guichard, P.

Science Advances 6(7), eaaz4137 (2020)

PubMed

DOI: DOI

180

Inner-membrane GspF of the bacterial type II secretion system is a dimeric adaptor mediating pseudopilus biogenesis

Van Putte, W., De Vos, T., Vanden Broeck, W., Stahlberg, H., Kudryashev, M., Savvides, S.N.

bioRxiv 435982, (2020)

179

Two new polymorphic structures of alpha-synuclein solved by cryo-electron microscopy

Guerrero-Ferreira, R., Taylor, N., Arteni, A.-A., Kumari, P., Mona, D., Ringler, P., Britschgi, M., Lauer, M.E., Verasdock, J., Riek, R., Melki, R., Meier, B.H., Böckmann, A., Bousset, L., Stahlberg, H.

eLife 8:e48907, (2019)

PubMed

DOI: DOI

178

Cryo-EM structure of the rhodopsin-G-alpha-i-beta-gamma complex reveals binding of the rhodopsin C-terminal tail to the G-beta subunit

Tsai, C.J., Marino, J., Adaixo, R., Pamula, F., Muehle, J., Maeda, S., Flock, T., Taylor, N., , ., Matile, H., Dawson, R.J.P., Deupi, X., Stahlberg, H., Schertler, G.F.X.

eLife 8;e46041, (2019)

PubMed

DOI: DOI

177

Lewy pathology in Parkinson's disease consists of crowded organelles and lipid membranes

Shahmoradian, S., Lewis, A., Genoud, C., Graff, A., Pérez Navarro, P., Goldie, K., Sütterlin, R., Castano-Diez, D., Ingrassia, A., Rozemuller, A.J.M., Paepe, A.D., Erny, J.Staempfli, A., Hoernschemeyer, J., Niedieker, D., El-Mashtoly, S.F., Gerwert, K., Bohrmann, B., Britschgi, M., Stahlberg, H., van de Berg, W.D.J., Lauer, M.E.

Nature Neuroscience 22, 1099-1109 (2019)

PubMed

DOI: Nature Neurosc.

176

‘Differential visual proteomics’: Enabling the proteome-wide comparison of protein structures of single-cells

Syntychaki, A., Rima, L., Schmidli, C., Stohler, T., Bieri, A., Sütterlin, R., Stahlberg, H., Castano-Diez, D., Braun, T.

J. of Proteome Research 18(9), 3521-3531 (2019)

PubMed

DOI: DOI

175

Part 2: Coping with Biology

Benjamin Stecher. (Images:, Lewis, A., Shahmoradian, S., Stahlberg, H., )

Tomorrow Edition (an online blog by Benjamin Stecher about his journey in Parkinson's disease), (2018)

DOI: Tomorrow Edition

174

Imaging of post-mortem human brain tissue using electron and X-ray microscopy

Lewis, A., Genoud, C., Pont, M., van de Berg, W.D.J., Frank, S., Stahlberg, H., Shahmoradian, S., Al-Amoudi, A.

Current Opinion Structural Biology 58, 138-148 (2019)

PubMed

DOI: DOI

173

Tumor-targeted 4-1BB agonists for combination with T cell bispecific antibodies as off-the-shelf therapy

Claus, C., Ferrara, C., Xu, W., Sam, J., Lang, S., Uhlenbrock, F., Albrecht, R., Herter, S., Schlenker, R., Hüsser, T., Diggelmann, S., Challier, J., Mössner, E., Hosse, RJ., Hofer, T., Brünker, P., Joseph, C., Benz, J., Ringler, P., Stahlberg, H., Lauer, M., et al., Klein, C., Umana, P.

Science Translational Medicine 11(496), 1-12 (2019)

PubMed

DOI: DOI

172

Microfluidic protein isolation and sample preparation for high resolution cryo-EM

Schmidli, C., Albiez, S., Rima, L., Righetto, R., , ., Oliva, P., Kovacik, L., Stahlberg, H., Braun, T.

PNAS 116(30), 15007-15012 (2019)

PubMed

DOI: PNAS

171

Cryo-EM structures of the pore-forming A subunit from the Yersinia entomophaga ABC toxin

Piper, S., Brillault, L., Rothnagel, R., Croll, T., Box, J., Chassagnon, I., Scherer, S., Goldie, K., Jones, S., Schepers, F., Hartley-Tassell, L., Ve, T., Busby, J., Dalziel, J., Lott, S., Hankamer, B., Stahlberg, H., Hurst, M., Landsberg, M

Nature Communications 10(1), 1952 (2019)

PubMed

DOI: DOI

170

Cryo-EM structure of phosphodiesterase 6 reveals insights into the allosteric regulation of type I phosphodiesterases

Gulati, Palczewski, K., Engel, A., Stahlberg, H., Kovacik, L.

Science Advances 5(2), eaav4322 (2019)

PubMed

DOI: DOI

169

Self-assembly of a designed nucleoprotein architecture through multimodal interactions

Subramanian, R.H., Smith, S.J., Alberstein, R.G., Bailey, J.B., Zhang, L., Cardone, G., Suominen, L., Chami, M., Stahlberg, H., Baker, T.S., Tezcan, F.A.

ACS Central Science 4(11), 1578-1586 (2018)

PubMed

DOI: DOI

168

Retrieving high-resolution information from disordered 2D crystals by single particle cryo-EM

Righetto, R., Biyani, N., Kowal, J., Chami, M., Stahlberg, H.

Nature Communications 10(1), 1722 (2019)

PubMed

DOI: Nature Comm.

167

Molecular structure and function of myelin protein P0 in membrane stacking

Raasakka, A., Ruskamo, S., Kowal, J., Han, H., Baumann, A., Myllykoski, M., Fasano, A., Rossano, R., Riccio, P., Buerck, J., Ulrich, A.S., Stahlberg, H., Kursula, P.

Scientific Reports 9(462), (2019)

PubMed

DOI: DOI

166

TDP-43 extracted from FTLD patient brains displays distinct aggregate assemblies and neurotoxic effects reflecting disease progression rates

Laferriere, F., Maniecka, Perez-Berlanga, Hruska-Plochan, Gilhespy, Hock, Wagner, Afroz, Boersema, Barmettler, Foti, Asi, Isaacs, Al-Amoudi, A., Lewis, A., Stahlberg, H., Ravits, De Giorgi, Ichas, Bezard, Picotti, P., Lashley, T., Polymenidou, M.

Nature Neuroscience 22, 65-77 (2019)

PubMed

DOI: DOI

165

Cerebral Corpora amylacea are dense membranous labyrinths containing structurally preserved cell organelles

Pérez Navarro, P., Genoud, C., Castano-Diez, D., Graff-Meyer, A., Lewis, A., de Gier, Y., Lauer, M.E., Britschgi, M., Bohrmann, B., Frank, S., Hench, J., Schweighauser, G., Rozemuller, A.J.M., van de Berg, W.D.J., Stahlberg, H., Shahmoradian, S.

Scientific Reports 8(18046), (2018)

DOI: DOI

164

Cryo-EM structures of a human ABCG2 mutant trapped in ATP-bound and substrate-bound states

Manolaridis, I., Jackson, S.M., Taylor, N., Kowal, J., Stahlberg, H., Locher, K.

Nature 563(7731), 426-430 (2018)

PubMed

DOI: DOI

163

Protocols for Subtomogram Averaging of Membrane Proteins in the Dynamo Software Package

Pérez Navarro, P., Stahlberg, H., Castano-Diez, D.

Frontiers in Molecular Biosciences 5(82), 1-18 (2018)

PubMed

DOI: DOI

162

Demonstration of femtosecond X-ray pump X-ray probe diffraction on protein crystals

Opara, N., Mohacsi, I., Makita, M., Castano-Diez, D., Diaz, A., Jurani, P., Marsh, M., Meents, A., Milne, C.J., Mozzanica, A., Padeste, C., Panneels, V., Sikorski, M., Song, S., Stahlberg, H., Vartiainen, I., Vera, L., Wang, M., Willmott, P.R., David, C.

Structural Dynamics 5(5), 054303 (2018)

PubMed

DOI: DOI

161

An iris diaphragm mechanism to gate a cyclic nucleotide-gated ion channel

Marchesi, A., Gao, X., Adaixo, R., Rheinberger, J., Stahlberg, H., Nimigean, C., Scheuring, S.

Nature Comm. 9(1), 3978 (2018)

PubMed

DOI: DOI

160

Structure of a PSI–LHCI–cyt b6f supercomplex in Chlamydomonas reinhardtii promoting cyclic electron flow under anaerobic conditions

Steinbeck J., Ross, I.L., Rothnagel, R., Gäbelein, P., Schulze, S., Giles, N., Ali, R., Drysdale, R., Sierecki, E., Gambia, Y., Stahlberg, H., Takahashi, Y., Hippler, M., Hankamer, B.

PNAS 115(41), 10517-10522 (2018)

PubMed

DOI: DOI

159

Cryo-EM structure of alpha-synuclein fibrils

Guerrero-Ferreira, R., Taylor, N., Mona, D., Ringler, P., Lauer, M.E., Riek, R., Britschgi, M., Stahlberg, H.

eLife 7(e36402), (2018)

PubMed

DOI: DOI

158

Structural basis for regulation of human acetyl-CoA carboxylase

Hunkeler, M., Hagmann, A., Stuttfeld, E., Chami, M., Guri, Y., Stahlberg, H., Maier, T.

Nature 558, 470-474 (2018)

PubMed

DOI: DOI

157

Structural basis of small-molecule inhibition of human multidrug transporter ABCG2

Jackson, S.M., Manolaridis, I., Kowal, J., Zechner, M., Taylor, N., Bause, M., Bauer, S., Bartholomaeus, R., Bernhardt, G., Koenig, B., Buschauer, A., Stahlberg, H., Altmann, K.H., Locher, K.P.

Nature Struct. Mol. Biol. 25(4), 333-340 (2018)

PubMed

DOI: DOI

156

Image processing techniques for high-resolution structure determination from badly ordered 2D crystals

Biyani, N., Scherer, S., Righetto, R., Kowal, J., Chami, M., Stahlberg, H.

Journal of Structural Biology 203(2), 120-134 (2018)

PubMed

DOI: DOI

155

Femtosecond X-ray coherent diffraction of aligned amyloid fibrils on low background graphene

Seuring, C., Ayyer, Filippaki, Barthelmess, Longchamp, Ringler, P., Pardini, Wojtas, Coleman, Dörner, Fuglerud, Hammarin, Habenstrein, Langkilde, Loquet, Meents, Riek, Stahlberg, H., Boutet, Hunter, Koglin, Liang, Ginn, Millane, Frank, Barty, Chapman

Nature Communications 9(1), 1836 (2018)

PubMed

DOI: DOI

154

Miniaturized sample preparation for transmission electron microscopy

Schmidli, C., Rima, L., Arnold, S., Stohler, T., Syntychaki, A., Bieri, A., Albiez, S., Goldie, K., Chami, M., Stahlberg, H., Braun, T.

Journal of Visual Experiments (JOVE) (137), (2018)

153

3D correlative electron microscopy reveals continuity of Brucella-containing vacuoles with the endoplasmic reticulum

Sedzicki, J., Tschon, T., Huey-Low, S., Willemart, K., Goldie, K., Lewtesson, J.-J., Stahlberg, H., Dehio, C.

J. of Cell Science 131(4), (2018)

PubMed

DOI: doi

152

Cryo-EM reconstruction of Type VI secretion system baseplate and sheath distal end

Nazarov, S., Schneider, J.PO., Brackmann, M., Goldie, K., Stahlberg, H., Basler, M.

EMBO Journal 37, e97103 (2018)

PubMed

DOI: DOI

151

Miniaturizing EM Sample Preparation: Opportunities, Challenges and "Visual Proteomics"

Arnold, S., Müller, S., Schmidli, C., Syntychaki, A., Rima, L., Chami, M., Stahlberg, H., Goldie, K., Braun, T.

Proteomics 18(5-6), e1700176 (2018)

PubMed

DOI: DOI

150

Structure of a zosuquidar and UIC2-bound human-mouse chimeric ABCB1

Alam, A., Küng, R., Kowal, J., McLeod, R., Tremp, N., Broude, E.V., Roninson, I.B., Stahlberg, H., Locher, K.P.

PNAS 115(9), E1973-E1982 (2018)

PubMed

DOI: DOI

149

MRCZ – A file format for cryo-TEM data with fast compression

McLeod, R., Righetto, R., Stewart, A., Stahlberg, H.

J. Struct. Biol. 201(3), 252-257 (2018)

PubMed

DOI: DOI

148

High-resolution cryo-EM structure of the cyclic nucleotide-modulated potassium channel MloK1 in a lipid bilayer

Kowal, J., Biyani, N., Chami, M., Scherer, S., Rzepiela, A., Baumgartner, P., Upadhyay, V., Nimigean, C.N., Stahlberg, H.

Structure 26(1), 20-27 (2018)

PubMed

DOI: DOI

147

Lipid Internal Dynamics Probed in Nanodiscs

Martinez, D., Decossas, M., Kowal, J., Frey, L., Stahlberg, H., Dufourc, E.-J.., Riek, R., Habenstein, B., Bibow, S., Loquet A.

ChemPhysChem 18(19), 2651-2657 (2017)

PubMed

DOI: DOI

146

Expression, Biochemistry, and Stabilization with Camel Antibodies of Membrane Proteins: Case Study of the Mouse 5-HT3 Receptor

Hassaïne, G., Deluz, C., Grasso, L., Wyss, R., Hovius, R., Stahlberg, H., Tomizaki, T., Desmyter, A., Moreau, C., Peclinovska, L., Minniberger, S., Mebarki, L., Li, X.-D.., Vogel, H., Nury, H.

Methods Mol. Biol. 1635(Chapter 8), 139-168 (2017)

PubMed

DOI: DOI

145

CryoEM structure of the extended type VI secretion system sheath–tube complex

Wang, J., Brackmann, M., Castano-Diez, D., Kudryashev, M., Goldie, K., Maier, T., Stahlberg, H., Basler, M.

Nature Microbiology 2(11), 1507-1512 (2017)

PubMed

DOI: DOI

144

Three-Dimensional Imaging of Biological Tissue by Cryo X-Ray Ptychography

Shahmoradian, S., Tsai, E.H.R., Diaz, A., Guizar-Sicairos, M., Spycher, L., Raabe, J., Britschgi, M., Ruf, A., Stahlberg, H., Holler, M.

Scientific Reports 7(2), 6291 (2017)

PubMed

DOI: DOI

143

Structure of the human multidrug transporter ABCG2

Taylor, N., Manolaridis, I., Jackson, S.M., Kowal, J., Stahlberg, H., Locher, K.P.

Nature 546, 504-509 (2017)

PubMed

DOI: doi

142

Membrane vesicle secretion and prophage induction in multidrug-resistant Stenotrophomonas maltophilia in response to ciprofloxacin stress

Devos, S., Van Putte, W., Vitse, J., Van Driessche, G., Stremersch, S., Van Den Broek, W., Raemdonck, K., Braeckmans, K., Stahlberg, H., Kudryashev, M., Savvides, S., Devreese, B.

Environmental Microbiology 19(10), 3930-3937 (2017)

PubMed

DOI: DOI

141

Direct protein crystallization on ultrathin membranes for diffraction measurements at X-ray free electron lasers

Opara, N., Martiel, I., Arnold, S., Braun, T., Stahlberg, H., Makita, M., David, C., Padeste, C.

J. of Applied Crystallography 50, 909-918 (2017)

DOI:

140

Cryo-EM analysis of homodimeric full-length LRRK2 and LRRK1 protein complexes

Sejwal, K., Chami, M., Remigy, H., Vancraenenbroeck, R., Sibran, W., Sütterlin, R., Baumgartner, P., McLeod, R., Chartier-Harlin. M.-C., Baekelandt, V., Stahlberg, H., Taymans, J.-M.

Scientific Reports 7(1), 8667-8678 (2017)

PubMed

DOI: DOI

139

Membrane association landscape of myelin basic protein portrays formation of the myelin major dense line

Raasakka, A., Ruskamo, S., Kowal, J., Barker, R., Baumann, A., Martel, A., Tuusa, J., Myllykoski, M., Bürck, J., Ulrich, A.S., Stahlberg, H., Kursula, P.

Scientific Reports 7(1), 4974-4991 (2017)

PubMed

DOI: DOI

138

Focus: The interface between data collection and data processing in cryo-EM

Biyani, N., Righetto, R., McLeod, R., Caujolle-Bert, D., Castano-Diez, D., Goldie, K., Stahlberg, H.

J. Struct. Biol. 198(2), 124-133 (2017)

PubMed

DOI:

137

Cell-free reconstitution reveals centriole cartwheel assembly mechanisms

Guichard, P., Hamel, V., Le Quennec, M., Banterle, N., Iacovache, I., Nemcikova, V., Flückiger, I., Goldie, K., Stahlberg, H., Levy, D., Zuber, B., Gönczy, P.

Nature Communications 8:14813, (2017)

PubMed

DOI:

136

Amyloid Fibril Polymorphism: Almost Identical on the Atomic Level, Mesoscopically Very Different

Seuring, C., Verasdonck, J., Ringler, P., Cadalbert, R., Stahlberg, H., Böckmann,A., Meier, B.H., Riek, R.

J. Phys. Chem. 121(8), 1783-1792 (2017)

PubMed

DOI: 10.1021/acs.jpcb.6b10624

135

Blotting-free and lossless cryo-electron microscopy grid preparation from nanoliter-sized protein samples and single-cell extracts

Arnold, S., Albiez, S., Bieri, A., Syntychaki, A., Adaixo, R., McLeod, R., Goldie, K., Stahlberg, H., Braun, T.

J. Struct. Biol. (197), 220-226 (2017)

PubMed

DOI: 10.1016/j.jsb.2016.11.002

134

Proteoliposomes - a system to study membrane proteins under buffer gradients by cryo-EM

Sejwal, K., Chami, M., Baumgartner, P., Kowal, J., Müller, S., Stahlberg, H.

Nanotechnology Reviews 6(1), 57-74 (2017)

DOI: DOI

133

Solution structure of discoidal high-density lipoprotein particles with a shortened apolipoprotein A-I

Bibow,S., Polyhach, Y., Eichmann, C., Chi, C.N., Kowal, J., Albiez, S., McLeod, R., Stahlberg, H., Jeschke, G., Günter, P., Riek, R.

Nature Structural and Molecular Biology 24, 187-193 (2017)

PubMed

DOI: 10.1038/nsmb.3345

132

Two-dimensional crystallization of the mouse serotonin 5-HT3A receptor

Rheinberger, J., Hassaine, G., Chami, M., Stahlberg, H., Vogel, H., Li, X.

Micron 90, 19-24 (2017)

PubMed

DOI: j.micron.2016.10.004

131

Biochemical and biophysical approaches to study the structure and function of the chloride channel (ClC) family of proteins

Abeyrathne, P., Chami, M., Stahlberg, H.

Biochimie 128-129, 154-162 (2016)

PubMed

DOI: 10.1016/j.biochi.2016.08.008

130

Robust image alignment for cryogenic transmission electron microscopy

McLeod, R., Kowal, J., Ringler, P., Stahlberg, H.

J. Struct. Biol. 197(3), 279-293 (2017)

PubMed

DOI: 10.1016/j.jsb.2016.12.006

129

GSDMD membrane pore formation constitutes the mechanism of pyroptotic cell death

Sborgi, L., Rühl, S., Mulvihill, E., Pipercevic, J., Heilig, R., Stahlberg, H., Farad, C.J., Müller, D.J., Broz, P., Hiller, S.

EMBO Journal 35(16), 1766-1778 (2016)

PubMed

DOI: 10.15252/embj.201694696

128

Real-time visualization of conformational changes within single MloK1 cyclic nucleotide-modulated channels

Rangl, M., Miyagi, A., Kowal, J., Stahlberg, H., Nimigean, C., Scheuring, S.

Nature Communications 7, 12789 (2016)

PubMed

DOI: 10.1038/NCOMMS12789

127

Thylakoid ultrastructure: Visualizing the photosynthetic machinery

Steinbeck, S., O’Mara, M.L., Ross, I., Stahlberg, H., Hankamer, B.

In: Hippler M. (eds) Chlamydomonas: Biotechnology and Biomedicine. Microbiology Monographs Vol. 31(Springer, Chambridge), 149-191 (2017)

DOI: DOI

126

Patent: Cryo-electron microscopy from nanoliter sample volumes

Arnold, S., Stahlberg, H., Braun, T.

UniTecTra Technology Opportunity, Ref. No. UA-17/141 (patent application filed), (2016)

125

Dynamo Catalogue: Geometrical tools and data management for particle picking in subtomogram averaging of cryo-electron tomograms

Castano-Diez, D., Kudryashev, M., Stahlberg, H.

J. Struct. Biol. 197(2), 135-144 (2017)

PubMed

DOI: 10.1016/j.jsb.2016.06.005

124

Total sample conditioning and preparation of nanoliter volumes for electron microscopy

Arnold, S., Albiez, S., Opara, N., Chami, M., Schmidli, C., Bieri, A., Padeste, C., Stahlberg, H., Braun, T.

ACS Nano 10, 4981-4988 (2016)

PubMed

DOI: 10.1021/acsnano.6b01328

123

Characterization of mAb dimers reveals predominant dimer forms common in therapeutic mAbs

Plath, F., Ringler, P., Graff, A., Stahlberg, H., Lauer, M., Rufer, A., Graewert, M., Svergun, D., Kellermann, G., Winkler, C., Stücke, J.O., Koulov, A., Schnaible, V.

mAbs 8(5), 928-940 (2016)

PubMed

DOI:

122

Cullin-RING ubiquitin E3 ligase regulation by the COP9 signalosome

Cavadini, S., Fischer, E.S., Goldie, K., Boehm, K., Lingaraju, G.M., Jones, M., Bunker, R.D., Richkule, R., Pantelic, R., Mohamed, W.I., Hassiepen, U., Beckwith, R.E.J., Stahlberg, H., and Thomae, N.H.

Nature 531(7596), 598-603 (2016)

PubMed

DOI: 10.1038/nature17416

121

Atomic structure of bacteriophage T4 baseplate and its function in triggering sheath contraction

Taylor, N., Prokhorov, N.S., Guerrero-Ferreira, R.C., Shneider, M.M., Browning, C., Goldie, K., Stahlberg, H., Leiman, P.G.

Nature 533(7603), 346-352 (2016)

PubMed

DOI: 10.1038/nature17971

120

Cholesteryl ester transfer between lipoproteins does not require the formation of a ternary tunnel complex with the cholesteryl ester transfer protein

Lauer, M.E., Graff, A., Rufer, A.C., Maugeais, C., von der Mark, E., Matile, H., D'Arcy, B., Magg, C., Ringler, P., Müller, S., Scherer, S., Dernick, G., Thoma, R., Hennig, M., Niesor, E.J., Stahlberg, H.

J. Struct. Biol. 194(2), 191-198 (2016)

DOI: 10.1016/j.jsb.2016.02.016

119

Preparation and characterization of stable alpha-synuclein lipoprotein particles

Eichmann, C., Campioni, S., Kowal, J., Maslennikov, I., Gerez, J., Liu, X., Verasdonck, J., Nespovitaya, N., Choe, S., Meier, B., Picotti, P., Rizo, J., Stahlberg, H., Riek, R.

J. Biol. Chem. 291(16), 8516-8527 (2016)

PubMed

118

The structure of the mouse serotonin 5-HT3 receptor in lipid vesicles

Kudryashev, M., Castano-Diez, D., Deluz, C., Hassaine, G., Grasso, L., Graff, A., Vogel, H., Stahlberg, H.

Structure 24(1), 165-170 (2016)

PubMed

DOI: 10.1016/j.str.2015.11.004

117

The lipidome associated with the gamma-secretase complex is required for its integrity and activity.

Ayciriex, S., Gerber, H., Osuna, G.M., Chami, M., Stahlberg, H., Shevchenko, A., Fraering, P.C.

Biochemical Journal 473(3), 321-334 (2016)

PubMed

DOI: 10.1042/BJ20150448

116

3D reconstruction of two-dimensional crystals

Stahlberg, H., Biyani, N., Engel, A.

Arch Biochem Biophys 581, 68-77 (2015)

PubMed

115

Structure and assembly of the mouse ASC inflammasome by combined NMR spectroscopy and cryo-electron microscopy

Sborgi, L., Ravotti, F., Dandey, V. P., Dick, M. S., Mazur, A., Reckel, S., Chami, M., Scherer, S., Huber, M., Bockmann, A., Egelman, E. H., Stahlberg, H., Broz, P., Meier, B. H., Hiller, S.

Proc Natl Acad Sci U S A 112(43), 13237-42 (2015)

PubMed

114

Structure of the type VI secretion system contractile sheath

Kudryashev, M., Wang, R. Y., Brackmann, M., Scherer, S., Maier, T., Baker, D., DiMaio, F., Stahlberg, H., Egelman, E. H., Basler, M.

Cell 160(5), 952-62 (2015)

PubMed

113

CTF challenge: result summary

Marabini, R., Carragher, B., Chen, S., Chen, J., Cheng, A., Downing, K. H., Frank, J., Grassucci, R. A., Bernard Heymann, J., Jiang, W., Jonic, S., Liao, H. Y., Ludtke, S. J., Patwari, S., Piotrowski, A. L., Quintana, A., Sorzano, C. O., Stahlberg, H., Vargas, J., Voss, N. R., Chiu, W.

J Struct Biol 190(3), 348-59 (2015)

PubMed

112

Translational arrest by a prokaryotic signal recognition particle is mediated by RNA interactions

Beckert, B., Kedrov, A., Sohmen, D., Kempf, G., Wild, K., Sinning, I., Stahlberg, H., Wilson, D. N., Beckmann, R.

Nat Struct Mol Biol 22(10), 767-73 (2015)

PubMed

111

Yersinia enterocolitica type III secretion injectisomes form regularly spaced clusters, which incorporate new machines upon activation

Kudryashev, M., Diepold, A., Amstutz, M., Armitage, J. P., Stahlberg, H., Cornelis, G. R.

Mol Microbiol 95(5), 875-84 (2015)

PubMed

110

Rendering graphene supports hydrophilic with non-covalent aromatic functionalization for transmission electron microscopy

Pantelic, R.S., Fu, W., Schönenberger, C., Stahlberg, H.

Appl Phys Lett 104(13), 134103-134107 (2014)

DOI: 10.1063/1.4870531

109

2dx_automator: implementation of a semiautomatic high-throughput high-resolution cryo-electron crystallography pipeline

Scherer, S., Kowal, J., Chami, M., Dandey, V., Arheit, M., Ringler, P., Stahlberg, H.

J Struct Biol 186(2), 302-7 (2014)

PubMed

108

openBEB: open biological experiment browser for correlative measurements

Ramakrishnan, C., Bieri, A., Sauter, N., Roizard, S., Ringler, P., Müller, S., Goldie, K., Enimanev, K., Stahlberg, H., Rinn, B., Braun, T.

BMC Bioinformatics 15, 84 (2014)

PubMed

107

A KcsA/MloK1 chimeric ion channel has lipid-dependent ligand-binding energetics

McCoy, J. G., Rusinova, R., Kim, D. M., Kowal, J., Banerjee, S., Jaramillo Cartagena, A., Thompson, A. N., Kolmakova-Partensky, L., Stahlberg, H., Andersen, O. S., Nimigean, C. M.

J Biol Chem 289(14), 9535-46 (2014)

PubMed

106

Single particle 3D reconstruction for 2D crystal images of membrane proteins

Scherer, S., Arheit, M., Kowal, J., Zeng, X., Stahlberg, H.

J Struct Biol 185(3), 267-77 (2014)

PubMed

105

Structural and mechanistic paradigm of leptin receptor activation revealed by complexes with wild-type and antagonist leptins

Moharana, K., Zabeau, L., Peelman, F., Ringler, P., Stahlberg, H., Tavernier, J., Savvides, S. N.

Structure 22(6), 866-77 (2014)

PubMed

104

Clostridium difficult toxin CDT hijacks microtubule organization and reroutes vesicle traffic to increase pathogen adherence

Schwan, C., Kruppke, A. S., Nolke, T., Schumacher, L., Koch-Nolte, F., Kudryashev, M., Stahlberg, H., Aktories, K.

Proc Natl Acad Sci U S A 111(6), 2313-8 (2014)

PubMed

103

Review: Cryo-electron microscopy of membrane proteins

Goldie, K., Abeyrathne, P., Kebbel, F., Chami, M., Ringler, P., Stahlberg, H.

In: Kuo J. (eds) Electron Microscopy. Methods in Molecular Biology (Methods and Protocols) Vol. 1117(Humana Press, Totowa, NJ, USA), 325-341 (2014)

PubMed

DOI: DOI

102

Disease modeling and phenotypic drug screening for diabetic cardiomyopathy using human induced pluripotent stem cells

Drawnel, F. M., Boccardo, S., Prummer, M., Delobel, F., Graff, A., Weber, M., Gerard, R., Badi, L., Kam-Thong, T., Bu, L., Jiang, X., Hoflack, J. C., Kiialainen, A., Jeworutzki, E., Aoyama, N., Carlson, C., Burcin, M., Gromo, G., Boehringer, M., Stahlberg, H., Hall, B. J., Magnone, M. C., Kolaj

Cell Rep 9(3), 810-21 (2014)

PubMed

101

The ultrastructure of Chlorobaculum tedium revealed by cryo-electron tomography

Kudryashev, M., Aktoudianaki, A., Dedoglou, D., Stahlberg, H., Tsiotis, G.

Biochim Biophys Acta 1837(10), 1635-42 (2014)

PubMed

100

Exploring the interactome: microfluidic isolation of proteins and interacting partners for quantitative analysis by electron microscopy

Giss, D., Kemmerling, S., Dandey, V., Stahlberg, H., Braun, T.

Anal Chem 86(10), 4680-7 (2014)

PubMed

99

Functional surface engineering by nucleotide-modulated potassium channel insertion into polymer membranes attached to solid supports

Kowal, J.L., Kowal, J., Wu, D., Stahlberg, H., Palivan, C. G., Meier, W. P.

Biomaterials 35(26), 7286-94 (2014)

PubMed

98

X-ray structure of the mouse serotonin 5-HT3 receptor

Hassaine, G., Deluz, C., Grasso, L., Wyss, R., Tol, M. B., Hovius, R., Graff, A., Stahlberg, H., Tomizaki, T., Desmyter, A., Moreau, C., Li, X. D., Poitevin, F., Vogel, H., Nury, H.

Nature 512(7514), 276-81 (2014)

PubMed

97

Ligand-induced structural changes in the cyclic nucleotide-modulated potassium channel MloK1

Kowal, J., Chami, M., Baumgartner, P., Arheit, M., Chiu, P. L., Rangl, M., Scheuring, S., Schroder, G. F., Nimigean, C. M., Stahlberg, H.

Nat Commun 5, 3106 (2014)

PubMed

96

Microfluidics to isolate untagged proteins from cell extracts for visual analysis by electron microscopy

, ., , ., Dandey, V., Stahlberg, H., Braun, T.

17th International Conference on Miniaturized Systems for Chemistry and Life Science Conference proceeding, (2013)

95

Single-cell lysis for visual analysis by electron microscopy

Kemmerling, S., Arnold, S., Bircher, B. A., Sauter, N., Escobedo, C., Dernick, G., Hierlemann, A., Stahlberg, H., Braun, T.

J Struct Biol 183(3), 467-73 (2013)

PubMed

94

Automation of image processing in electron crystallography

Arheit, M., Castano-Diez, D., Thierry, R., Gipson, B. R., Zeng, X., Stahlberg, H.

Methods Mol Biol 955, 313-30 (2013)

PubMed

93

Structure and substrate-induced conformational changes of the secondary citrate/sodium symporter CitS revealed by electron crystallography

Kebbel, F., Kurz, M., Arheit, M., Grütter, M. G., Stahlberg, H.

Structure 21(7), 1243-50 (2013)

PubMed

92

Structure of the dodecameric Yersinia enterocolitica secretin YscC and its trypsin-resistant core

Kowal, J., Chami, M., Ringler, P., Müller, S., Kudryashev, M., Castano-Diez, D., Amstutz, M., Cornelis, G. R., Stahlberg, H., Engel, A.

Structure 21(12), 2152-61 (2013)

PubMed

91

Cryo-electron tomography reveals four-membrane architecture of the Plasmodium apicoplast

Lemgruber, L., Kudryashev, M., Dekiwadia, C., Riglar, D. T., Baum, J., Stahlberg, H., Ralph, S. A., Frischknecht, F.

Malar J 12, 25 (2013)

PubMed

90

Thermal unfolding of a mammalian pentameric ligand-gated ion channel proceeds at consecutive, distinct steps

Tol, M. B., Deluz, C., Hassaine, G., Graff, A., Stahlberg, H., Vogel, H.

J Biol Chem 288(8), 5756-69 (2013)

PubMed

89

Image processing of 2D crystal images

Arheit, M., Castano-Diez, D., Thierry, R., Gipson, B. R., Zeng, X., Stahlberg, H.

Methods Mol Biol 955, 171-94 (2013)

PubMed

88

Vaccinia virus entry is followed by core activation and proteasome-mediated release of the immunomodulatory effector VH1 from lateral bodies

Schmidt, F. I., Bleck, C. K., Reh, L., Novy, K., Wollscheid, B., Helenius, A., Stahlberg, H., Mercer, J.

Cell Rep 4(3), 464-76 (2013)

PubMed

87

In situ structural analysis of the Yersinia enterocolitica injectisome

Kudryashev, M., Stenta, M., Schmelz, S., Amstutz, M., Wiesand, U., Castano-Diez, D., Degiacomi, M. T., Munnich, S., Bleck, C. K., Kowal, J., Diepold, A., Heinz, D. W., Dal Peraro, M., Cornelis, G. R., Stahlberg, H.

Elife 2, e00792 (2013)

PubMed

86

Merging of image data in electron crystallography

Arheit, M., Castano-Diez, D., Thierry, R., Abeyrathne, P., Gipson, B. R., Stahlberg, H.

Methods Mol Biol 955, 195-209 (2013)

PubMed

85

Molecular assembly of the aerolysin pore reveals a swirling membrane-insertion mechanism

Degiacomi, M. T., Iacovache, I., Pernot, L., Chami, M., Kudryashev, M., Stahlberg, H., van der Goot, F. G., Dal Peraro, M.

Nat Chem Biol 9(10), 623-9 (2013)

PubMed

84

The application of graphene as a sample support in transmission electron microscopy

Pantelic, R.S., Meyer, J.C., Kaiser, U., Stahlberg, H.

Solid State Commun 152(15), 1375-1382 (2012)

DOI: 10.1016/j.ssc.2012.04.038

83

Electron microscopy analysis of 2D crystals of membrane proteins

Abeyrathne, P.D., Arheit, M., Kebbel, F., Castano-Diez, D., Goldie, K., Chami, M., Renault, L., Kühlbrandt, W., Stahlberg, H.

Comprehensive Biophysics 1, 277-310 (2012)

DOI: 10.1016/B978-0-12-374920-8.00119-3

82

Projection structure of the secondary citrate/sodium symporter CitS at 6 Å resolution by electron crystallography

Kebbel, F., Kurz, M., Grütter, M. G., Stahlberg, H.

J Mol Biol 418(42006), 117-26 (2012)

PubMed

81

RNAi screening reveals proteasome- and Cullin3-dependent stages in vaccinia virus infection

Mercer, J., Snijder, B., Sacher, R., Burkard, C., Bleck, C. K., Stahlberg, H., Pelkmans, L., Helenius, A.

Cell Rep 2(4), 1036-47 (2012)

PubMed

80

Assessing the benefits of focal pair cryo-electron tomography

Kudryashev, M., Stahlberg, H., Castano-Diez, D.

J Struct Biol 178(2), 88-97 (2012)

PubMed

79

Structural basis for chirality and directional motility of Plasmodium sporozoites

Kudryashev, M., Munter, S., Lemgruber, L., Montagna, G., Stahlberg, H., Matuschewski, K., Meissner, M., Cyrklaff, M., Frischknecht, F.

Cell Microbiol 14(11), 1757-68 (2012)

PubMed

78

Structure and function of purified monoclonal antibody dimers induced by different stress conditions

Paul, R., Graff, A., Stahlberg, H., Lauer, M. E., Rufer, A. C., Beck, H., Briguet, A., Schnaible, V., Buckel, T., Boeckle, S.

Pharm Res 29(8), 2047-59 (2012)

PubMed

77

Characterization of the motion of membrane proteins using high-speed atomic force microscopy

Casuso, I., Khao, J., Chami, M., Paul-Gilloteaux, P., Husain, M., Duneau, J. P., Stahlberg, H., Sturgis, J. N., Scheuring, S.

Nat Nanotechnol 7(8), 525-9 (2012)

PubMed

76

Connecting micro-fluidics to electron microscopy

Kemmerling, Simon, Ziegler, J., Schweighauser, G., Arnold, S., Giss, D., Müller, S., Ringler, P., Goldie, K., Goedecke, N., Hierlemann, A., Stahlberg, H., Engel, A., Braun, T.

J Struct Biol 177(1), 128-134 (2012)

PubMed

75

Dynamo: a flexible, user-friendly development tool for subtomogram averaging of cryo-EM data in high-performance computing environments

Castano-Diez, D., Kudryashev, M., Arheit, M., Stahlberg, H.

J Struct Biol 178(2), 139-51 (2012)

PubMed

74

Ionic liquids as matrices in microfluidic sample deposition for high-mass matrix- assisted laser desorption/ionization mass spectrometry

Weidmann, S., Kemmerling, S., Madler, S., Stahlberg, H., Braun, T., Zenobi, R.

Eur J Mass Spectrom (Chichester, Eng) 18(3), 279-86 (2012)

PubMed

73

Limiting factors in single particle cryo electron tomography

Kudryashev, M., Castano-Diez, D., Stahlberg, H.

Comput Struct Biotechnol J 1, e201207002 (2012)

PubMed

72

Mus81-Mms4 functions as a single heterodimer to cleave nicked intermediates in recombinational DNA repair

Schwartz, E. K., Wright, W. D., Ehmsen, K. T., Evans, J. E., Stahlberg, H., Heyer, W. D.

Mol Cell Biol 32(15), 3065-80 (2012)

PubMed

71

Oxidative doping renders graphene hydrophilic, facilitating its use as a support in biological TEM

Pantelic, R. S., Suk, J. W., Hao, Y., Ruoff, R. S., Stahlberg, H.

Nano Lett 11(10), 4319-23 (2011)

PubMed

70

Polymer-based cell-free expression of ligand-binding family B G-protein coupled receptors without detergents

Klammt, C., Perrin, M. H., Maslennikov, I., Renault, L., Krupa, M., Kwiatkowski, W., Stahlberg, H., Vale, W., Choe, S.

Protein Sci 20(6), 1030-41 (2011)

PubMed

69

Rad51 paralogues Rad55-Rad57 balance the antirecombinase Srs2 in Rad51 filament formation

Liu, J., Renault, L., Veaute, X., Fabre, F., Stahlberg, H., Heyer, W. D.

Nature 479(7372), 245-8 (2011)

PubMed

68

Automatic recovery of missing amplitudes and phases in tilt-limited electron crystallography of two-dimensional crystals

Gipson, B. R., Masiel, D. J., Browning, N. D., Spence, J., Mitsuoka, K., Stahlberg, H.

Phys Rev E Stat Nonlin Soft Matter Phys 84(1 Pt 1), 11916 (2011)

PubMed

67

Graphene: Substrate preparation and introduction

Pantelic, R. S., Suk, J. W., Magnuson, C. W., Meyer, J. C., Wachsmuth, P., Kaiser, U., Ruoff, R. S., Stahlberg, H.

J Struct Biol 174(1), 234-8 (2011)

PubMed

66

Interaction of complexes I, III, and IV within the bovine respirasome by single particle cryo electron tomography

Dudkina, N. V., Kudryashev, M., Stahlberg, H., Boekema, E. J.

Proc Natl Acad Sci U S A 108(37), 15196-200 (2011)

PubMed

65

3D reconstruction from 2D crystal image and diffraction data

Schenk, A. D., Castano-Diez, D., Gipson, B., Arheit, M., Zeng, X., Stahlberg, H.

Methods Enzymol 482, 101-29 (2010)

PubMed

64

Preparation of 2D crystals of membrane proteins for high-resolution electron crystallography data collection

Abeyrathne, P. D., Chami, M., Pantelic, R. S., Goldie, K., Stahlberg, H.

Method Enzymol 481, 25-43 (2010)

PubMed

63

An optical and microPET assessment of thermally-sensitive liposome biodistribution in the Met-1 tumor model: importance of formulation

Paoli, E. E., Kruse, D. E., Seo, J. W., Zhang, H., Kheirolomoom, A., Watson, K. D., Chiu, P., Stahlberg, H., Ferrara, K. W.

J Control Release 143(1), 13-22 (2010)

PubMed

62

High-resolution low-dose scanning transmission electron microscopy

Buban, J. P., Ramasse, Q., Gipson, B., Browning, N. D., Stahlberg, H.

J Electron Microsc (Tokyo) 59(2), 103-12 (2010)

PubMed

61

Structural variability of edge dislocations in a SrTiO3 low-angle [001] tilt grain boundary

Buban, J.P., Chi, M., Masiel, D.J., Bradley, J.P., Jiang, B., Stahlberg, H., Browning, N.D.

J Mater Res 24, 2191-2199 (2009)

DOI: 10.1557/jmr.2009.0259

60

2007 annual progress report synopsis of the Center for Structures of Membrane Proteins

Stroud, R. M., Choe, S., Holton, J., Kaback, H. R., Kwiatkowski, W., Minor, D. L., Riek, R., Sali, A., Stahlberg, H., Harries, W.

J Struct Funct Genomics 10(2), 193-208 (2009)

PubMed

59

Coassembly of Mgm1 isoforms requires cardiolipin and mediates mitochondrial inner membrane fusion

DeVay, R. M., Dominguez-Ramirez, L., Lackner, L. L., Hoppins, S., Stahlberg, H., Nunnari, J.

J Cell Biol 186(6), 793-803 (2009)

PubMed

58

Crystal structures of Limulus SAP-like pentraxin reveal two molecular aggregations

Shrive, A. K., Burns, I., Chou, H. T., Stahlberg, H., Armstrong, P. B., Greenhough, T. J.

J Mol Biol 386(5), 1240-54 (2009)

PubMed

57

Membrane activity of a C-reactive protein

Harrington, J. M., Chou, H. T., Gutsmann, T., Gelhaus, C., Stahlberg, H., Leippe, M., Armstrong, P. B.

FEBS Lett 583(6), 1001-5 (2009)

PubMed

56

Structure determination using electron crystallography

Evans, J.E., Renault, L., Stahlberg, H.

In: 3D-Electron Microscopy in Life Sciences (a Textbook on DVD). Ed. A. Verkleij, E.V. Orlova, and A. Leis. First edition. 3DEM NETWORK of EXCELLENCE (European Union) , (2008)

55

2dx - Automated 3D structure reconstruction from 2D crystal data

Gipspon, B., Zeng, X., Stahlberg, H.

Microscopy and Microanalysis 14(Supp 2), 1290-1291 (2008)

DOI: 10.1017/S1431927608081919

54

Bridging across length scales: multi-scale ordering of supported lipid bilayers via lipoprotein self-assembly and surface patterning

Vinchurkar, M. S., Bricarello, D. A., Lagerstedt, J. O., Buban, J. P., Stahlberg, H., Oda, M. N., Voss, J. C., Parikh, A. N.

J Am Chem Soc 130(33), 11164-9 (2008)

PubMed

53

The fold of alpha-synuclein fibrils

Vilar, M., Chou, H. T., Luhrs, T., Maji, S. K., Riek-Loher, D., Verel, R., Manning, G., Stahlberg, H., Riek, R.

Proc Natl Acad Sci U S A 105(25), 8637-42 (2008)

PubMed

52

Low-dose aberration corrected cryo-electron microscopy of organic specimens

Evans, J. E., Hetherington, C., Kirkland, A., Chang, L. Y., Stahlberg, H., Browning, N.

Ultramicroscopy 108(12), 1636-44 (2008)

PubMed

51

Membrane pore formation by pentraxin proteins from Limulus, the American horseshoe crab

Harrington, J. M., Chou, H. T., Gutsmann, T., Gelhaus, C., Stahlberg, H., Leippe, M., Armstrong, P. B.

Biochem J 413(2), 305-13 (2008)

PubMed

50

Molecular electron microscopy: state of the art and current challenges

Stahlberg, H., Walz, T.

ACS Chem Biol 3(5), 268-81 (2008)

PubMed

49

2dx_merge: data management and merging for 2D crystal images

Gipson, B., Zeng, X., Stahlberg, H.

J. Struct. Biol. 160(3), 375-384 (2007)

PubMed

DOI: 10.1016/j.jsb.2007.09.011

48

Editorial: Spotlight on Electron Crystallography

Hankamer, B., Glaeser, B., Stahlberg, H.

J Struct Biol 160(3), 263-264 (2007)

PubMed

DOI: 10.1016/j.jsb.2007.11.001

47

Three-dimensional electron microscopy of macromolecular assemblies (J. Frank), Book Review

Renault, L., Stahlberg, H.

Scanning 29(1), 37 (2007)

46

Oocyte CD9 is enriched on the microvillar membrane and required for normal microvillar shape and distribution

Runge, K. E., Evans, J. E., He, Z. Y., Gupta, S., McDonald, K. L., Stahlberg, H., Primakoff, P., Myles, D. G.

Dev Biol 304(1), 317-25 (2007)

PubMed

45

2dx – User-friendly image processing for 2D crystals

Gipson, B., Zeng, X., Zhang, Z. Y., Stahlberg, H.

J Struct Biol 157(1), 64-72 (2007)

PubMed

44

A maximum likelihood approach to two-dimensional crystals

Zeng, X., Stahlberg, H., Grigorieff, N.

J Struct Biol 160(3), 362-74 (2007)

PubMed

43

Automatic lattice determination for two-dimensional crystal images

Zeng, X., Gipson, B., Zheng, Z. Y., Renault, L., Stahlberg, H.

J Struct Biol 160(3), 353-61 (2007)

PubMed

42

Structural and kinetic studies of induced fit in xylulose kinase from Escherichia coli

Di Luccio, E., Petschacher, B., Voegtli, J., Chou, H. T., Stahlberg, H., Nidetzky, B., Wilson, D. K.

J Mol Biol 365(3), 783-98 (2007)

PubMed

41

Electron crystallography of membrane proteins

Chou, H. T., Evans, J. E., Stahlberg, H.

Methods Mol Biol 369, 331-43 (2007)

PubMed

40

The structure of the prokaryotic cyclic nucleotide-modulated potassium channel MloK1 at 16 A resolution

Chiu, P. L., Pagel, M. D., Evans, J., Chou, H. T., Zeng, X., Gipson, B., Stahlberg, H., Nimigean, C. M.

Structure 15(9), 1053-64 (2007)

PubMed

39

Avoiding charge induced drift in vitrified biological specimens through scanning transmission electron microscopy.

Nicotra, G., Chou, H.-T., Stahlberg, H., Browning, N.D.

Microscopy and Microanalysis 12(Supp. 02), 246-247 (2006)

DOI: 10.1017/S1431927606063070

38

Cryo-electron microscopy analysis of a 105 kDa protein particle: the xylulose kinase from E. coli

Chou, H.-T., di Luccio, E., Wilson, D., Stahlberg, H.

Microscopy and Microanalysis 12(Supp 2), 408-409 (2006)

DOI: 10.1017/S1431927606066530

37

A homotetrameric kinesin-5, KLP61F, bundles microtubules and antagonizes Ncd in motility assays

Tao, L., Mogilner, A., Civelekoglu-Scholey, G., Wollman, R., Evans, J., Stahlberg, H., Scholey, J. M.

Curr Biol 16(23), 2293-302 (2006)

PubMed

36

Double hexameric ring assembly of the type III protein translocase ATPase HrcN

Müller, S., Pozidis, C., Stone, R., Meesters, C., Chami, M., Engel, A., Economou, A., Stahlberg, H.

Mol Microbiol 61(1), 119-25 (2006)

PubMed

35

Functional modulation of IFT kinesins extends the sensory repertoire of ciliated neurons in Caenorhabditis elegans

Evans, J. E., Snow, J. J., Gunnarson, A. L., Ou, G., Stahlberg, H., McDonald, K. L., Scholey, J. M.

J Cell Biol 172(5), 663-9 (2006)

PubMed

34

Milestones in electron crystallography

Renault, L., Chou, H. T., Chiu, P. L., Hill, R. M., Zeng, X., Gipson, B., Zhang, Z. Y., Cheng, A., Unger, V., Stahlberg, H.

J Comput Aided Mol Des 20(42193), 519-27 (2006)

PubMed

33

Applications of Atomic Scale Scanning Transmission Electron Microscopy

Browning, N.D., Erni, R., Mitterbauer, C.J., Fu, L., Chi, M., Mehraeen, S., Herrera, M., Chou, H.-T., Stahlberg, H., Ramasse, Q.M., Ziegler, A., Nicotra, G., Arslan, I., Idrobo, J.-C., Stach, E.A., Bleiloch, A.

Microscopy and Microanalysis 12(S02), 134-135 (2006)

DOI: 10.1017/S143192760606627X

32

Testing 3-D Reconstruction Methods for Electron Tomography

Mehraeen, S., Stahlberg, H., Evans, J. E., Meesters, C., Arslan, I., Midgley, P.A., Browning, N. D.

Microscopy and Microanalysis 11(S02), 336-337 (2005)

DOI: 10.1017/S1431927605508390

31

The 4.5 Å structure of human AQP2

Schenk, A. D., Werten, P. J., Scheuring, S., de Groot, B. L., Müller, S., Stahlberg, H., Philippsen, A., Engel, A.

J Mol Biol 350(2), 278-89 (2005)

PubMed

30

Oligomeric structure of the Bacillus subtilise cell division protein DivIVA determined by transmission electron microscopy

Stahlberg, H., Kutejova, E., Muchova, K., Gregorini, M., Lustig, A., Müller, S., Olivieri, V., Engel, A., Wilkinson, A. J., Barak, I.

Mol Microbiol 52(5), 1281-90 (2004)

PubMed

29

Type III protein translocase: HrcN is a peripheral ATPase that is activated by oligomerization

Pozidis, C., Chalkiadaki, A., Gomez-Serrano, A., Stahlberg, H., Brown, I., Tampakaki, A. P., Lustig, A., Sianidis, G., Politou, A. S., Engel, A., Panopoulos, N. J., Mansfield, J., Pugsley, A. P., Karamanou, S., Economou, A.

J Biol Chem 278(28), 25816-24 (2003)

PubMed

28

IPLT: An image processing library and toolkit for the electron microscopy community

Philippsen, A., Schenk, A. D., Stahlberg, H., Engel, A.

J Struct Biol 144(42006), 42106 (2003)

PubMed

27

Progress in the analysis of membrane protein structure and function

Werten, P. J., Remigy, H. W., de Groot, B. L., Fotiadis, D., Philippsen, A., Stahlberg, H., Grubmuller, H., Engel, A.

FEBS Lett 529(1), 65-72 (2002)

PubMed

26

Aquaglyceroporins: channel proteins with a conserved core, multiple functions, and variable surfaces

Engel, A., Stahlberg, H.

Int Rev Cytol 215, 75-104 (2002)

PubMed

25

Sampling the conformational space of membrane protein surfaces with the AFM

Scheuring, S., Muller, D. J., Stahlberg, H., Engel, H. A., Engel, A.

Eur Biophys J 31(3), 172-8 (2002)

PubMed

24

Assessing the structure of membrane proteins: combining different methods gives the full picture

Stahlberg, H., Engel, A., Philippsen, A.

Biochem Cell Biol 80(5), 563-8 (2002)

PubMed

23

Charting and unzipping the surface layer of Corynebacterium glutamicum with the atomic force microscope

Scheuring, S., Stahlberg, H., Chami, M., Houssin, C., Rigaud, J. L., Engel, A.

Mol Microbiol 44(3), 675-84 (2002)

PubMed

22

The aquaporin superfamily: structure and function

Stahlberg, H., Heymann, B., Mitsuoka, K., Fuyijoshi, Y., Engel, A.

Current Topics in Membranes 51, 39-119 (2001)

21

ATP synthase: constrained stoichiometry of the transmembrane rotor

Muller, D. J., Dencher, N. A., Meier, T., Dimroth, P., Suda, K., Stahlberg, H., Engel, A., Seelert, H., Matthey, U.

FEBS Lett 504(3), 219-22 (2001)

PubMed

20

Bacterial Na(+)-ATP synthase has an undecameric rotor

Stahlberg, H., Muller, D. J., Suda, K., Fotiadis, D., Engel, A., Meier, T., Matthey, U., Dimroth, P.

EMBO Rep 2(3), 229-33 (2001)

PubMed

19

Two-dimensional crystals: a powerful approach to assess structure, function and dynamics of membrane proteins

Stahlberg, H., Fotiadis, D., Scheuring, S., Remigy, H., Braun, T., Mitsuoka, K., Fujiyoshi, Y., Engel, A.

FEBS Lett 504(3), 166-72 (2001)

PubMed

18

The aquaporin sidedness revisited

Scheuring, S., Tittmann, P., Stahlberg, H., Ringler, P., Borgnia, M., Agre, P., Gross, H., Engel, A.

J. Mol. Biol. 299(5), 1271-1278 (2000)

PubMed

17

GlpF: A structural variant of the aquaporin tetramer

Braun, T., Philippsen, A., Wirtz, S., Borgnia, J., Agre, P., Kühlbrandt, W., Engel, A., Stahlberg, H.

In `Molecular biology and physiology of water and solute transport`, Hohmann & S. Nielsen (Eds.) Kluwer Academic, New York. ISBN 0-306-46501-9 , 13-22 (2000)

16

Proton-powered turbine of a plant motor

Seelert, H., Poetsch, A., Dencher, N. A., Engel, A., Stahlberg, H., Muller, D. J.

Nature 405(6785), 418-9 (2000)

PubMed

15

Surface tongue-and-groove contours on lens MIP facilitate cell-to-cell adherence

Fotiadis, D., Hasler, L., Muller, D. J., Stahlberg, H., Kistler, J., Engel, A.

J Mol Biol 300(4), 779-89 (2000)

PubMed

14

The 3.7 Å projection map of the glycerol facilitator GlpF: a variant of the aquaporin tetramer

Braun, T., Philippsen, A., Wirtz, S., Borgnia, M. J., Agre, P., Kühlbrandt, W., Engel, A., Stahlberg, H.

EMBO Rep 1(2), 183-9 (2000)

PubMed

13

The 6.9-Å structure of GlpF: a basis for homology modeling of the glycerol channel from Escherichia coli

Stahlberg, H., Braun, T., de Groot, B., Philippsen, A., Borgnia, M. J., Agre, P., Kühlbrandt, W., Engel, A.

J Struct Biol 132(2), 133-41 (2000)

PubMed

12

Domain structure of secretin PulD revealed by limited proteolysis and electron microscopy

Nouwen, N., Stahlberg, H., Pugsley, A. P., Engel, A.

EMBO J 19(10), 2229-36 (2000)

PubMed

11

The reaction centre from green sulphur bacteria Chlorobium tedium: a structural analysis by scanning transmission electron microscopy

Remigy, H. W., Stahlberg, H., Fotiadis, D., Müller, S., Wolpensinger, B., Engel, A., Hauska, G., Tsiotis, G.

J Mol Biol 290(4), 851-858 (1999)

PubMed

10

Electron Cryomicroscopy

Dubochet, J., Stahlberg, H.

eLS - Enceclopedia of Life Sciences (online library), (2001)

DOI: 10.1038/npg.els.0002999

9

Structure of the water channel AqpZ from Escherichia coli revealed by electron crystallography

Ringler, P., Borgnia, M. J., Stahlberg, H., Maloney, P. C., Agre, P., Engel, A.

J Mol Biol 291(5), 1181-90 (1999)

PubMed

8

High resolution AFM topographs of the Escherichia coli water channel aquaporin Z

Scheuring, S., Ringler, P., Borgnia, M., Stahlberg, H., Muller, D. J., Agre, P., Engel, A.

EMBO J 18(18), 4981-7 (1999)

PubMed

7

Mitochondrial Lon of Saccharomyces cerevisiae is a ring-shaped protease with seven flexible subunits

Stahlberg, H., Kutejova, E., Suda, K., Wolpensinger, B., Lustig, A., Schatz, G., Engel, A., Suzuki, C. K.

Proc Natl Acad Sci U S A 96(12), 6787-90 (1999)

PubMed

6

The reaction centre of the photounit of Rhodospirillum rubrum is anchored to the light-harvesting complex with four-fold rotational disorder

Stahlberg, H., Dubochet, J., Vogel, H., Ghosh, R.

Photosynthesis Research 55, 363-368 (1998)

5

Are the light-harvesting I complexes from Rhodospirillum rubrum arranged around the reaction centre in a square geometry?

Stahlberg, H., Dubochet, J., Vogel, H., Ghosh, R.

J Mol Biol 282(4), 819-31 (1998)

PubMed

4

Friction anisotropy and asymmetry of a compliant monolayer induced by a small molecular tilt

Liley, M., Gourdon, D., Stamou, D., Meseth, U., Fischer, T. M., Lautz, C., Stahlberg, H., Vogel, H., Burnham, N. A., Duschl, C.

Science 280(5361), 273-5 (1998)

PubMed

3

Chloroplast F0F1 ATP synthase imaged by atomic force microscopy

Neff, D., Tripathi, S., Middendorf, K., Stahlberg, H., Butt, H. J., Bamberg, E., Dencher, N. A.

J Struct Biol 119(2), 139-48 (1997)

PubMed

2

Sulphur-bearing lipids for the covalent attachment of supported lipid bilayers to gold surfaces: a detailed characterisation and analysis

Duschl, C., Liley, M., Lang, J, Ghandi, A., Zakeeruddin, S.M., Stahlberg, H., Dubochet, J., Nemetz, A., Knoll, W., Vogel, H.

Materials Science & Engineering C 4, 7-18 (1996)

1